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Annotated reference transcriptome for female Culicoides sonorensis biting midges

Unigene sequences were annotated by BlastX alignment to the non-redundant protein database (National Center for Biotechnology Information/GenBank) and the Aedes aegypti and Culex quinquefasciatus gene annotations (Vectorbase). This was done with a 1e-05 expectation value. Top hits are shown including accession numbers and description, if available. Unigene number and corresponding GenBank accession numbers are provided for all C. sonorensis genes. Both tables are modified from supplementary information tables at http://dx.doi.org/10.1371/journal.pone.0098123.s003 and numbered accordingly.

0
No licence known
Tags:
Culicoides sonorensisEHDVEpizootic hemorrhagic disease virusNP104RNAseqanautogenybiting midgebluetonguede novo transcriptomeflieshematophagyinsectsvectorvitellogenesis
Formats:
CSVXLSX
United States Department of Agriculture10 months ago
Forest Health Aerial Survey 1980-2022Source

For large areas, like Washington State, download as a file geodatabase.  Large data sets like this one, for the State of Washington, may exceed the limits for downloading as shape files, excel files, or KML files.  For areas less than a county, you may use the map to zoom to your area and download as shape file, excel or KML, if that format is desired.Every summer for approximately the past seventy years, an insect and disease aerial detection survey has been flown of all the forested acres of Washington state (except where noted in the digital data by large 'NF' (not flown) areas). This survey is a cooperative effort between the U.S. Forest Service and the WADNR with two different flight observers each sketching a two mile swath out their side of the plane. The primary mission of the survey is to record recently killed and defoliated groups of trees throughout the state, and to continually build a historical record of these trends. The vast majority of damage found is caused by insect and disease damage agents; however, trees killed by early spring feeding of black bears or by events such as winter storms, fires, floods and landslides are recorded as well. Current defoliation can be detected as soon as the affected foliage changes color that year. However, whole tree mortality is not current since only flagged trees (i.e., trees which have a bright red, orange, or yellow foliage color) are recorded. This means that trees killed the year of the survey will not have changed color yet and so a one year lag time results. Since only this distinctive color or "signature" of the tree can be seen. It is an educated guess as to the causal agent. We therefore use ground surveys to reinforce our estimates as much as possible. Example: When bear damage is spotted while surveying, a polygon is drawn on the map of the size and location of the damage. The polygon is then labeled with the appropriate damage agent (i.e. Bear) and the number of trees affected rounded to the nearest five. No vertical data is recorded.

0
No licence known
Tags:
.sdArcGISBiotaDNRDepartment of Natural ResourcesForest disturbancePacific NorthwestService DefinitionWAWashingtonWashington Stateaerial surveydiseaseforestforest healthforest insectsinsect damageinsects
Formats:
HTMLArcGIS GeoServices REST APIZIPCSVGeoJSONKML
The Washington State Department of Ecology10 months ago
Homalodisca vitripennis Genome Assembly 1.0

The Baylor College of Medicine recently sequenced and annotated the Homalodisca vitripennis genome as part of the i5k pilot project. The Glassy-winged sharpshooter, GWSS, (Homalodisca vitripennis) [Hemiptera: Cicadellidae], occurs naturally within the southern United States. Once restricted to the southeastern states, it was accidentally spread across the south into California. The GWSS is a voracious feeder, and can fly long distances, preferring to feed upon cultivated crops, ie. Grapevine, fruit trees, and in the nymphal stages many weeds and grasses. The GWSS is a serious threat to the viticulture industry as the primary vector of the plant-infecting bacterium, Xylella fastidiosa, Xf. The GWSS feeds on a diverse number of plants, during which the bacteria can infect many tree fruit, nut, vine, and woody ornamental crops. Glassy-winged Sharpshooter adults are ½ inch (13mm) long being fairly large for the Sharpshooter leafhopper family of insects. Sharpshooters use an ovipositor to lay eggs inside of the underside of leaves. The Sharpshooter will lay its eggs on almost any plant including cactus. The egg masses are usually composed of 10-20 eggs, but can lay more or as few as 1. Most of the egg masses have a waxy coating of brocosomes around the eggs for protection. The nymphs (5 instars) do not have wings, but develop wing pads in the 5th instar and are generally smaller than the adults, ranging in size from .07 inches (2 mm) to nearly ½ inch (13mm) long. The nymphs have very distinct red eyes. The Sharpshooter can consume about 300 times its own weight in fluids from the xylem vessels of the plants upon which it feeds, thus producing copious amounts of excreta fluid. This dataset presents the Homalodisca vitripennis genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource (https://www.ncbi.nlm.nih.gov/assembly/GCA_000696855.1). Assembly method details will be available in a forthcoming publication. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

0
No licence known
Tags:
Glassy-winged sharpshooterHomalodisca vitripennisOrganism projecti5kinsects
Formats:
tgzDOCX
United States Department of Agriculture10 months ago
Homalodisca vitripennis genome annotations v0.5.3

The Homalodisca vitripennis genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Glassy-winged sharpshooter, GWSS, (Homalodisca vitripennis) [Hemiptera: Cicadellidae], occurs naturally within the southern United States. Once restricted to the southeastern states, it was accidentally spread across the south into California. The GWSS is a voracious feeder, and can fly long distances, preferring to feed upon cultivated crops, ie. Grapevine, fruit trees, and in the nymphal stages many weeds and grasses. The GWSS is a serious threat to the viticulture industry as the primary vector of the plant-infecting bacterium, Xylella fastidiosa, Xf. The GWSS feeds on a diverse number of plants, during which the bacteria can infect many tree fruit, nut, vine, and woody ornamental crops. Glassy-winged Sharpshooter adults are ½ inch (13mm) long being fairly large for the Sharpshooter leafhopper family of insects. Sharpshooters use an ovipositor to lay eggs inside of the underside of leaves. The Sharpshooter will lay its eggs on almost any plant including cactus. The egg masses are usually composed of 10-20 eggs, but can lay more or as few as 1. Most of the egg masses have a waxy coating of brocosomes around the eggs for protection. The nymphs (5 instars) do not have wings, but develop wing pads in the 5th instar and are generally smaller than the adults, ranging in size from .07 inches (2 mm) to nearly ½ inch (13mm) long. The nymphs have very distinct red eyes. The Sharpshooter can consume about 300 times its own weight in fluids from the xylem vessels of the plants upon which it feeds, thus producing copious amounts of excreta fluid. This dataset presents the Homalodisca vitripennis genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource (https://www.ncbi.nlm.nih.gov/assembly/GCA_000696855.1). Assembly method details will be available in a forthcoming publication. NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

0
No licence known
Tags:
Glassy-winged sharpshooterNP304i5kinsects
Formats:
tgz
United States Department of Agriculture10 months ago