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Data from: Interspecific variation in persistence of buried weed seeds follows trade-offs among physiological, chemical and physical seed defenses

This dataset includes data on the chemical, physical and biological traits of weed seeds of 11 arable weed species in relation to the persistence of these seeds in the soil seedbank within a common-garden burial study. We performed a common garden weed seed burial study at the University of Illinois Crop Sciences Research and Education Center in Savoy, IL (40.048757 N, -88.237206 E), from October 2007 through October 2012. The experiment was arranged in a split-plot design with four replications of the sub-plot variable species nested within main plot variable burial duration (1 to 5 years). Eleven annual weed species were included, spanning a broad range of seed sizes, dormancy types and seedbank persistence: Abutilon theophrasti Medik (velvetleaf), Ambrosia trifida L. (giant ragweed), Amaranthus tuberculatus [Moq]. Sauer (common waterhemp), Bassia scoparia [L.] A. J. Scott (kochia), Chenopodium album L. (common lambsquarters), Ipomoea hederacea Jacq. (ivyleaf morningglory), Panicum miliaceum L. (wild proso millet), Polygonum pensylvanicum L. (Pennsylvania smartweed), Setaria faberi Herrm. (giant foxtail), Setaria pumila [Poir] Roem. (yellow foxtail) and Thlaspi arvense L. (field pennycress). Weed seeds were collected in 2007 from the experimental site and adjoining fields by gently shaking mature inflorescences over a bucket and bulking seeds from multiple plants to form a composite sample for each species. Light seed were removed by processing with a seed cleaner, after which seeds were stored in air tight containers at 4C until burial. Immediately prior to burial, seed viability was assayed with tetrazolium. Burial units consisted of 100 seeds of a given species placed in the bottom of a 2.5 cm deep square tray, 10 cm on a side, made of 0.5 mm stainless steel wire mesh. Tray bottoms were permeable to water, but prevented seeds from escaping. Trays were filled 2 cm deep with soil from a nearby grass sward that had not been cropped for over 30 years, to avoid contamination with weed seeds (verified by elutriating samples of this soil). Within each experimental unit, we excavated a 2 cm deep rectangle 30 cm wide by 40 cm long, and placed trays for each of the 11 species side by side into this depression so that their soil surface was flush with the surrounding soil, leaving a 0.5 cm wire mesh lip exposed in each tray. Each experimental unit was covered by wire mesh with 1 cm square openings to permit access to invertebrate granivores. The study plot was fenced to exclude large vertebrates. Seedling emergence was recorded weekly from March through October every year. Seed trays for a given burial duration treatment were removed in October of the assigned year and seeds recovered via elutriation (Wiles et al. 1996). Recovered seeds were incubated under oscillating temperature conditions (15 C/dark for 10 hr, 25 C/light for 14 hr) for 2 weeks and germination recorded. Ungerminated seeds assessed as viable through tetrazolium testing were considered dormant. SEED TRAITS We measured chemical and physical seed traits on freshly collected seeds following the methods outlined in Tiansawat et al. (2014), using multiple measures of each trait class to provide functional redundancy and allow them to be treated as latent or manifest variables during multivariate analyses. For the chemical defense trait class we measured ortho-dihydroxyphenol (o-DHP) concentration, abundance and diversity of phenolic compounds quantified with high performance liquid chromatography, impact of seed homogenate on brine shrimp survival, and seed removal by invertebrate granivores. Physical traits measured included seed coat thickness, seed mass, and seed coat rupture force. Pairwise interspecific phylogenetic distances were quantified using the phydist subroutine of Phylocom 4.2 (www.phylodiversity.net). Also included is a list of references from the associated literature review.

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Abutilon theophrastiAmaranthus tuberculatusAmbrosia trifidaArtemiaBassia scopariaChenopodium albumIllinoisIpomoea hederaceaNP304Panicum miliaceum subsp. ruderalePersicaria pensylvanicaSetaria faberiSetaria pumila subsp. pumilaThlaspi arvenseannual weedsburied seedschemical defensesdata collectiondormancygerminationgranivoreshigh performance liquid chromatographyinflorescencesinterspecific variationmultivariate analysisphenolic compoundsseed coatseed defense theoryseed traitsseedling emergenceseedssoil samplingsoil seedbankstemperaturetetrazoliumviabilityweed managementweed seed persistenceweeds
Formats:
XLSXCSV
United States Department of Agriculture10 months ago
Farming Systems Study for Greenhouse gas Reduction through Agricultural Carbon Enhancement network in Morris, Minnesota

Farming Systems Study for Greenhouse gas Reduction through Agricultural Carbon Enhancement network in Morris, Minnesota Tillage is decreasing globally due to recognized benefits of fuel savings and improved soil health in the absence of disturbance. However, a perceived inability to control weeds effectively and economically hinders no-till adoption in organic production systems in the Upper Midwest, USA. A strip-tillage (ST) strategy was explored as an intermediate approach to reducing fuel use and soil disturbance, and still controlling weeds. An 8-year comparison was made between two tillage approaches, one primarily using ST the other using a combination of conventional plow, disk and chisel tillage [conventional tillage (CT)]. Additionally, two rotation schemes were explored within each tillage system: a 2-year rotation (2y) of corn (Zea mays L.), and soybean (Glycine max [L.] Merr.) with a winter rye (Secale cereale L.) cover crop; and a 4-year rotation (4y) of corn, soybean, spring wheat (Triticum aestivum L.) underseeded with alfalfa (Medicago sativa L.), and a second year of alfalfa. These treatments resulted in comparison of four main management systems CT-2y, CT-4y, ST-2y and ST-4y, which also were managed under fertilized and non-fertilized conditions. Yields, whole system productivity (evaluated with potential gross returns), and weed seed densities (first 4 years) were measured. Across years, yields of corn, soybean and wheat were greater by 34% or more under CT than ST but alfalfa yields were the same. Within tillage strategies, corn yields were the same in 2y and 4y rotations, but soybean yields, only under ST, were 29% lower in the fertilized 4y than 2 yr rotation. In the ST-4y system yields of corn and soybean were the same in fertilized and non-fertilized treatments. Over the entire rotation, system productivity was highest in the fertilized CT-2y system, but the same among fertilized ST-4y, and non-fertilized ST-2y, ST-4y, and CT-4y systems. Over the first 4 years, total weed seed density increased comparatively more under ST than CT, and was negatively correlated to corn yields in fertilized CT systems and soybean yields in the fertilized ST-2y system. These results indicated ST compromised productivity, in part due to insufficient weed control, but also due to reduced nutrient availability. ST and diverse rotations may yet be viable options given that overall productivity of fertilized ST-2y and CT-4y systems was within 70% of that in the fertilized CT-2y system. Closing the yield gap between ST and CT would benefit from future research focused on organic weed and nutrient management, particularly for corn.

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Amaranthus retroflexusAmbrosia artemisiifoliaChenopodium albumEchinochloa crus-galliEconomic Research ServiceEnvironmentGRACEnetHydraMinnesotaMorris MN FSNP211NP212Natural Resources Conservation ServiceNatural Resources and GenomicsOxalisSetaria viridisSinapis arvensisSoilSoil TemperatureSwineairair temperaturealfalfaapplication ratebeveragesbiomassbiomass productioncalcium chloridecarboncarbon dioxidechiselingclaycleaningcollarscombustioncomputed tomographycomputer softwareconventional tillagecorncover cropscrop rotationcropscuttingdairy manurediscingdiurnal variationemissionsequationsexperimental designfarmingfarming systemsfertilizer applicationfertilizersflame ionizationforagefreezingglacial tillglobal warminggrain yieldgreenhouse gas emissionsgreenhouse gasesgrowing seasonharrowingharvestingheadheat sumshoeingicelakesmagnesiummanagement systemsmanual weed controlmarket pricesmature plantsmethanemixed croppingmolesmonitoringmowingnitrogen fixationnitrous oxideno-tillagenutrient contenton-farm researchorganic foodspHpasturespesticidespig manureplantingplowsregression analysisresidual effectsrootsrow spacingryesalesseed collectingseedbedsseedsshootssnowsoil depthsoil texturesorrelsoybeansspringspring wheatstarter fertilizersstatistical modelsstrip tillagetemperaturetillageweed controlweedswheatwinter
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United States Department of Agriculture10 months ago
Germplasm Resources Information Network (GRIN)

The Germplasm Resources Information Network (GRIN) is an online portal for information about agricultural genetic resources that are managed by the Agricultural Research Service of USDA, along with U.S. partnering organizations. The content includes general information about ARS animal, microbial and plant germplasm collections, most notably the U.S. National Plant Germplasm System (NPGS). The NPGS curates more than 600,000 active accessions of living plant material at 20 genebank locations around the U.S., and makes small quantities available globally to plant breeders and other professional scientists. GRIN also documents activities of Crop Germplasm Committees (CGC) that support the NPGS. The CGCs are comprised of public and private sector subject matter experts for a given crop (there are currently 44 CGCs) who voluntarily provide input on technical and operational matters to the NPGS. The site includes two searchable datasets: the ARS Rhizobium collection and Plant Variety Protection Certificates. The Rhizobium collection is living bacteria that nodulate the roots of leguminous plants symbiotically to provide nitrogen fixation. Samples are available to research scientists globally upon request. The Plant Variety Protection (PVP) Certificates are issued by the Agricultural Marketing Service (AMS) of USDA to provide intellectual property protection to registered new varieties of plants that are propagated by seed or tubers. The GRIN site allows queries of PVPs by certificate number, name of the crop, variety name, or certificate holder, all using data provided by the AMS.

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Tags:
Food SecurityLivestockMaizeNational ArboretumRiceTomatoangiospermsanimalsarid land plantbiofluidscell culturescottongeneticsgermplasmgrainsgymnospermslegumesnp301organismsornamental plantpeaplantspotatopteridophytesseedssoybeanspeciestissue culturesu.s. forest service
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United States Department of Agriculture10 months ago
Germplasm Resources Information Network (GRIN)

The Germplasm Resources Information Network (GRIN) is an online portal for information about agricultural genetic resources that are managed by the Agricultural Research Service of USDA, along with U.S. partnering organizations. The content includes general information about ARS animal, microbial and plant germplasm collections, most notably the U.S. National Plant Germplasm System (NPGS). The NPGS curates more than 600,000 active accessions of living plant material at 20 genebank locations around the U.S., and makes small quantities available globally to plant breeders and other professional scientists. GRIN also documents activities of Crop Germplasm Committees (CGC) that support the NPGS. The CGCs are comprised of public and private sector subject matter experts for a given crop (there are currently 44 CGCs) who voluntarily provide input on technical and operational matters to the NPGS. The site includes two searchable datasets: the ARS Rhizobium collection and Plant Variety Protection Certificates. The Rhizobium collection is living bacteria that nodulate the roots of leguminous plants symbiotically to provide nitrogen fixation. Samples are available to research scientists globally upon request. The Plant Variety Protection (PVP) Certificates are issued by the Agricultural Marketing Service (AMS) of USDA to provide intellectual property protection to registered new varieties of plants that are propagated by seed or tubers. The GRIN site allows queries of PVPs by certificate number, name of the crop, variety name, or certificate holder, all using data provided by the AMS.

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No licence known
Tags:
Food SecurityLivestockMaizeNational ArboretumRiceTomatoU.S. Forest Serviceangiospermsanimalsarid land plantbiofluidscell culturescottongeneticsgermplasmgrainsgymnospermslegumesnp301organismsornamental plantpeaplantspotatopteridophytesseedssoybeanspeciestissue cultures
Formats:
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United States Department of Agriculture10 months ago
Legume (Fabaceae) Fruits and Seeds Version 2

This is an identification key to genera for seeds and fruits of the legume family. The coverage is world wide, and for each genus there are descriptions of the seeds and fruits, distribution data, and images. The interactive software system INTKEY is used for accessing the data and images. The key can be used for identifying to genus unknown legume samples or for querying the data and images for legume genera, and is designed for seed analysts, technicians, port inspectors, weed scientists, ecologists, botanists, and researchers who need to identify isolated legume fruits and seeds. Procedures relating to preparation, collection, and authentication of data are provided in the 'Procedures' resource file. In order to utilize the identification key the entire folder needs to be downloaded and extracted with all internal structure unmodified.

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Tags:
Intkeyfruitsgeographic distributionidentification keysinteractivenp301seeds
Formats:
ZIPrtf
United States Department of Agriculture10 months ago
Plant Variety Protection Office Certificate Database

The Plant Variety Protection Office (PVPO) Scanned Certificates Database is a collection of Certificates of Protection for new plant varieties that are seed reproduced or tuber propagated. A variety may be represented by seeds, transplants, plants, tubers, tissue culture plantlets and other matter. A Certificate of Protection is awarded to an owner of a variety after an examination shows that it is new, distinct from other varieties, and genetically uniformed and stable through successive generations. This tool allows stakeholders access to the breeding history and morphological characteristics used in developing new plant varieties. This tool contains over 5,000 varieties that have been issued a Certificate of Protection since 1975.

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Tags:
breedercertificatecharacteristicsdistinctintellectual propertymorphologyownerplantplantletsprotectionseedstissue culturetransplanttubervariety
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United States Department of Agriculture10 months ago
The GRIN-Global Project

GRIN-Global is an ongoing international collaborative project to develop shared and open-source applications that help manage plant germplasm collections. The software was jointly developed by the Agricultural Research Service of USDA, Global Crop Diversity Trust, and Bioversity International, with the first version released in December 2011. The ARS has used GRIN-Global to manage its plant germplasm collections, the U.S. National Plant Germplasm System, since November 2015. GRIN-Global is an extension of Germplasm Resources Information Network (GRIN) information management system, which was first developed by ARS beginning in the mid-1980s. GRIN-Global is comprised of a suite of computer applications that are used internally by genebank staff to curate collections, as well as a public website through which scientists can query the database and request samples of germplasm through a shopping cart process.

0
No licence known
Tags:
Food SecurityLivestockMaizeNational ArboretumRiceTomatoU.S. Forest Serviceangiospermsanimalsarid land plantbiofluidscell culturescottongeneticsgermplasmgrainsgymnospermslegumesnp301organismsornamental plantpeaplantspotatopteridophytesseedssoybeanspeciestissue cultures
Formats:
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United States Department of Agriculture10 months ago