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Data from: Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass

Dollar spot is one of the most destructive globally distributed diseases of turfgrass. The identity of the fungus responsible for the disease has been the subject of debate for more than 75 years. These datasets provide the phylogenetic evidence from three nucleotide sequence markers (CaM, ITS and Mcm7) that underlie the establishment of the new fungal genus Clarireedia, which includes four species that cause turfgrass dollar spot disease: Clarireedia homoeocarpa, C. bennettii, C. jacksonii, and C. monteithiana. Datasets include the DNA sequence alignments for the CaM, ITS and Mcm7 markers for exemplar Clarireedia isolates, and the complete combined phylogenetic dataset and phylogenetic tree file.

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Tags:
ClarireediaClarireedia bennettiiClarireedia homoeocarpaClarireedia jacksoniiClarireedia monteithianaNP303ascomycetous fungiphylogeneticplant diseaseturfgrass
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TXT
United States Department of Agriculture10 months ago
Data from: Genome resources for seven fungal isolates that cause turfgrass dollar spot disease, including Clarireedia jacksonii and C. monteithiana

Ascomycete fungi in the genus Clarireedia are responsible for dollar spot, one of the most destructive and costly diseases affecting turfgrasses worldwide. Almost all grasses grown as turf are susceptible to dollar spot, including many high value grass species commonly used for golf courses. This Ag Data Commons dataset provides the genome sequences for seven isolates of Clarireedia fungi that cause dollar spot disease, including sequences of the two most widespread species, C. jacksonii and C. monteithiana. These data are freely available for research purposes.

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Tags:
ClarireediaClarireedia jacksoniiClarireedia monteithianaNP303ascomycetous fungidollar spot diseasegenome assemblyturfgrass
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TXTZIP
United States Department of Agriculture10 months ago
Turfgrass Soil Carbon Change Through Time: Raw Data and Code

Data Description Managed turfgrass is a common component of urban landscapes that is expanding under current land use trends. Previous studies have reported high rates of soil carbon sequestration in turfgrass, but no systematic review has summarized these rates nor evaluated how they change as turfgrass ages. We conducted a meta-analysis of soil carbon sequestration rates from 63 studies. Those data, as well as the code used to analyze them and create figures, are shared here. Dataset Development We conducted a systematic review from Nov 2020 to Jan 2021 using Google Scholar, Web of Science, and the Michigan Turfgrass Information File Database. The search terms targeted were "soil carbon", "carbon sequestration", "carbon storage", or “carbon stock”, with "turf", "turfgrass", "lawn", "urban ecosystem", or "residential", “Fescue”, “Zoysia”, “Poa”, “Cynodon”, “Bouteloua”, “Lolium”, or “Agrostis”. We included only peer-reviewed studies written in English that measured SOC change over one year or longer, and where grass was managed as turf (mowed or clipped regularly). We included studies that sampled to any soil depth, and included several methodologies: small-plot research conducted over a few years (22 datasets from 4 articles), chronosequences of golf courses or residential lawns (39 datasets from 16 articles), and one study that was a variation on a chronosequence method and compiled long-term soil test data provided by golf courses of various ages (3 datasets from Qian & Follett, 2002). In total, 63 datasets from 21 articles met the search criteria. We excluded 1) duplicate reports of the same data, 2) small plot studies that did not report baseline SOC stocks, and 3) pure modeling studies. We included five papers that only measured changes in SOC concentrations, but not areal stocks (i.e., SOC in Mg ha-1). For these papers, we converted from concentrations to stocks using several approaches. For two papers (Law & Patton, 2017; Y. Qian & Follett, 2002) we used estimated bulk densities provided by the authors. For the chronosequences reported in Selhorst & Lal (2011), we used the average bulk density reported by the author. For the 13 choronosequences reported in Selhorst & Lal (2013), we estimated bulk density from the average relationship between percent C and bulk density reported by Selhorst (2011). For Wang et al. (2014), we used bulk density values from official soil survey descriptions. Data provenance In most cases we contacted authors of the studies to obtain the original data. If authors did not reply after two inquiries, or no longer had access to the data, we captured data from published figures using WebPlotDigitizer (Rohatgi, 2021). For three manuscripts the data was already available, or partially available, in public data repositories. Data provenance information is provided in the document "Dataset summaries and citations.docx". Recommended Uses We recommend the following to data users: Consult and cite the original manuscripts for each dataset, which often provide additional information about turfgrass management, experimental methods, and environmental context. Original citations are provided in the document "Dataset summaries and citations.docx". For datasets that were previously published in public repositories, consult and cite the original datasets, which may provide additional data on turfgrass management practices, soil nitrogen, and natural reference sites. Links to repositories are in the document "Dataset summaries and citations.docx". Consider contacting the dataset authors to notify them of your plans to use the data, and to offer co-authorship as appropriate.

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Tags:
Climate ChangeNP212greenhouse gas emissionslawnsoil carbon sequestrationturfgrassurban
Formats:
CSVRDOCXXLSXTXT
United States Department of Agriculture10 months ago